.travis.yml
.travis_before_install.sh
.travis_install.sh
.travis_test.sh
LICENSE.txt
README.md
samgui.png
setup.py
example_data/darmanis_ann.csv
example_data/darmanis_data.csv.gz
example_data/schisto2.5_tpm.csv.gz
example_data/schisto3.5_tpm.csv.gz
paper_data_collection_plotting/cluster_benchmark_barplot.ipynb
paper_data_collection_plotting/corruption_screen.ipynb
paper_data_collection_plotting/figure1_metrics.ipynb
paper_data_collection_plotting/seurat_screen.ipynb
sam_algorithm.egg-info/PKG-INFO
sam_algorithm.egg-info/SOURCES.txt
sam_algorithm.egg-info/dependency_links.txt
sam_algorithm.egg-info/not-zip-safe
sam_algorithm.egg-info/requires.txt
sam_algorithm.egg-info/top_level.txt
samalg/__init__.py
samalg/gui.py
samalg/utilities.py
samalg/__pycache__/__init__.cpython-36.pyc
samalg/__pycache__/gui.cpython-36.pyc
samalg/__pycache__/utilities.cpython-36.pyc
test/test_sam.py
tutorial/quickstart_guide.ipynb
tutorial/.ipynb_checkpoints/basic_tutorial-checkpoint.ipynb
tutorial/SAM_Batch/macrophage_analysis.ipynb
tutorial/SAM_Batch/schisto_batch_correction.ipynb
tutorial/SAM_Batch/.ipynb_checkpoints/macrophage_analysis-checkpoint.ipynb
tutorial/SAM_Batch/.ipynb_checkpoints/schisto_batch_correction-checkpoint.ipynb
tutorial/SAM_Functions/function_details.ipynb
tutorial/SAM_Functions/.ipynb_checkpoints/function_details-checkpoint.ipynb
tutorial/SAM_IO/saving_loading_data.ipynb
tutorial/SAM_IO/.ipynb_checkpoints/saving_loading_data-checkpoint.ipynb
tutorial/SAM_Parameters/parameter_exploration.ipynb
tutorial/SAM_Parameters/.ipynb_checkpoints/parameter_exploration-checkpoint.ipynb
tutorial/SAM_Plotting/plotting_tutorial.ipynb
tutorial/SAM_Plotting/.ipynb_checkpoints/plotting_tutorial-checkpoint.ipynb
tutorial/SAM_Structure/SAM_attributes.ipynb
tutorial/SAM_Structure/.ipynb_checkpoints/SAM_attributes-checkpoint.ipynb